Major changes
-
All functions now include a
.return_raw
argument, enabling the user to retrieve
the raw JSON from API calls. -
Functions that return a paginated response now include a
.verbose
argument,
which can be set toFALSE
to suppress pagination messages. TheitemsPerPage
argument for these functions can also be set globally by adjusting option
"gtexr.itemsPerPage". -
get_dataset_info()
has now been fixed (previously returned an empty tibble). -
Breaking changes:
-
get_sample_datasets_endpoints()
has been renamed to
get_sample_datasets()
. This is to match the naming convention used for
get_sample_biobank_data()
, whereby 'get_sample' is appended with
their respective category titles 'datasets' and 'biobank_data'. -
get_multi_tissue_eqtls()
has been fixed to return a tibble with one row
per data item. ArgumentgencodeIds
has also been renamed togencodeId
to
match the GTEx API.
-
Minor changes and bug fixes
-
Various function arguments have been updated to match the GTEx API:
-
get_sqtl_genes()
argumenttissueSiteDetailId
has been pluralised to
tissueSiteDetailIds
. -
get_eqtl_genes()
,get_sqtl_genes()
,get_exons()
,get_neighbor_gene()
,
get_subject()
,get_tissue_site_detail()
,get_significant_single_tissue_sqtls()
,
download()
andget_sample_datasets()
(formerly called
get_sample_datasets_endpoints()
) default argument values now match API.
-