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gtexr 0.2.0

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@rmgpanw rmgpanw released this 24 Apr 21:39

Major changes

  • All functions now include a .return_raw argument, enabling the user to retrieve
    the raw JSON from API calls.

  • Functions that return a paginated response now include a .verbose argument,
    which can be set to FALSE to suppress pagination messages. The itemsPerPage
    argument for these functions can also be set globally by adjusting option
    "gtexr.itemsPerPage".

  • get_dataset_info() has now been fixed (previously returned an empty tibble).

  • Breaking changes:

    • get_sample_datasets_endpoints() has been renamed to
      get_sample_datasets(). This is to match the naming convention used for
      get_sample_biobank_data(), whereby 'get_sample' is appended with
      their respective category titles 'datasets' and 'biobank_data'.

    • get_multi_tissue_eqtls() has been fixed to return a tibble with one row
      per data item. Argument gencodeIds has also been renamed to gencodeId to
      match the GTEx API.

Minor changes and bug fixes

  • Various function arguments have been updated to match the GTEx API:

    • get_sqtl_genes() argument tissueSiteDetailId has been pluralised to
      tissueSiteDetailIds.

    • get_eqtl_genes(), get_sqtl_genes(), get_exons(), get_neighbor_gene(),
      get_subject(), get_tissue_site_detail(), get_significant_single_tissue_sqtls(),
      download() and get_sample_datasets() (formerly called
      get_sample_datasets_endpoints()) default argument values now match API.