Archive for Amsterdam

a journal of the wars year

Posted in Books, Kids, Mountains, pictures, Travel, Wines with tags , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , on July 18, 2025 by xi'an

 Read Patrick Dewdney’s La Maison des Veilleurs, the fourth volume in this fantastic fantasy series. Only to realise by the end that this was not the end! The setting is the same as in the previous volumes, which makes this one less exciting and prone to extended lazy episodes. The main character, Syffe, keeps puzzling about his destiny and culpability in past events, and it took me a while to get re-hooked, but this remains a remarkable creation. Hopefully soon to be completed! During my Singaporean trip, I also read Sayaka Murata’s Earthlings which is a short fantasy in the Murakami sense, a disrupting mixture of realism (and nostalgia of childhood days) and of unreal behaviours of the characters. The story revolves around mental and sexual aggressions of the main character as a pre-teen, from a paedophile teacher as well as an abusive mother and a transparent father. The story gradually turns away from any pretence to realism and the end is a wee bit of a disappointment. Still worth reading imho. As well as Graham Greene’s The Man Within, which I had not read before (during an episode of intense exploration of his work, following the discovery of The End of the Affair and Brighton Rock). This is one of the earliest Greene’s, and it does contain many hints and premises of the great books to come, with the themes of pursuit, guilt, salvation already there, but as such, the story is rather awkward and contrived, with unnatural dialogues, inner thoughts revolving in circles, and a complete lack of realism in the scenario. The style itself is definitely Greene’s, with beautiful descriptions of the landscape. (I wonder why the cover features the famous Preikestolen cliff on the Lysefjord  rather than the more sedate Shoreham downs, where smuggling French alcohols makes sense!)

Made no cooking for an entire week but enjoyed the almost infinite variety of Singaporean cuisines, with some nice discoveries. If missing the chili crab session on two consecutive nights! (And, coïncidence!, sat next to the same passenger on both flights between Paris and Singapore. If not the same crew as it happened once between Amsterdam and Calgary.) Had a weekend to recover and make most of my “classics”, incl. the weekly whey buckwheat galettes. And missing once again to keep an aquafaba mousse mouss-y enough!

Watched one episode of When Life Gives You Tangerines, which features Jeju women (haenyeo) diving for abalone harvesting (which I tasted in Singapore, if not likely from Jeju). And (at last) Oppenheimer on my flight back, as a way to fight sleep towards resetting my internal clock. Which I mostly enjoyed, despite some awkwardness in the scenario and an old-fashioned way of flipping between different eras, with black and white episodes in case one does not notice. And a very poor treatment of female characters. The ghastly moments when the team celebrates the destruction of Nagasaki and Hiroshima or when officials refuse to drop from the nuclear arm race are quite strong, especially these days. Among the MCMC originators, only Edward Teller is involved in the story, from his obsession with the H bomb to his testimony against Oppenheimer at the high of the McCarthy Red Scare… I also sped through Companion, a lame movie about support robots turning into killers that offers little in either thriller or comic perspectives. Possibly written by ChatGPT?!

a novel discrepancy measure

Posted in Statistics, University life with tags , , , , , on June 1, 2025 by xi'an

My friend EJ Wagenmakers, along with his colleague  Raoul Grasman, have proposed a novel measure of discrepancy between two distributions that they formulate through a basic Bayesian lens as an expected posterior probability, written as

D_{\mathrm EP}(f||g) = \int_{\mathfrak X} \frac{f(x)}{f(x)+g(x)}f(x)\,\text dx

(with no priors harmed in the process!) in case both distributions are absolutely continuous wrt a common dominating measure, with densities f and g. Which I have not met before. This discrepancy has nicer properties than Kullback-Leibler in that it is symmetric, that

D_{\mathrm EP}(f||g) = \int_{\mathfrak X}\frac{1}{f(x)^{-1}+g(x)^{-1}}\frac{f(x)}{g(x)}\,\text dx

does not require absolute continuity, and suffers less from tail influence and from asymmetric convergence speeds between null and alternative. From a truly Bayesian perspective, comparing two posterior predictive densities this way is less appealing since they are not available in closed form, but the posterior probability in favour of model f can be replaced with a Monte Carlo estimate.

new ISBA section on Bayesian Social Sciences [reposted]

Posted in Statistics, University life with tags , , , , , , , , , , , , , , , , on November 26, 2024 by xi'an

We are proposing a new section on Bayesian Social Sciences at ISBA. If you agree that this section would be useful, please add your name to the petition!

Bayesian methods have become increasingly popular in many Social Sciences: there have been applications in fields as diverse as Anthropology, Archaeology, Demography, Economics, Geography, History, Linguistics, Political Science, Psychology, and Sociology, among others. The appeal of the Bayesian framework may be philosophical, or may be practical, because of informative prior distributions, structured models which are well suited to Bayesian inference, or a strong need for uncertainty quantification.

Statisticians and practitioners have recently started meeting at workshops on Bayesian Methods for the Social Sciences. The 2022 edition in Paris and 2024 edition in Amsterdam gathered around 80 participants each; work has started to prepare the 2026 edition.

To help organize this community, and to strengthen links between statisticians and practitioners in the Social Sciences, we propose to start a new ISBA section on Bayesian Social Sciences. To create a new section, the ISBA bylaws require a petition signed by at least 30 ISBA members.

If you are interested, you can read the proposed bylaws and add your name to the petition. Please forward to colleagues who might find this relevant!

The proposed initial section officers are:
Monica Alexander
Nial Friel
Adrian Raftery
Robin Ryder
EJ Wagenmakers

arX’ig!

Posted in Books, pictures, Statistics, University life with tags , , , , , , , on September 16, 2024 by xi'an

safe Bayes & e-values & least favourable priors

Posted in Books, pictures, Statistics, University life with tags , , , , , , , , , , , , , , , , , , , , , , on March 2, 2024 by xi'an

The paper by Peter Grünwald, Rianne de Heide and Wouter Koolen on safe testing was read before The Royal Statistical Society at a meeting organized by the Research Section on Wednesday, 24th January, 2024, after many years in the making, to the point that several papers based on this initial one have appeared in the meanwhile, incl. some submissions to Biometrika. Like this one in the current issue of Statistical Science dedicated to reproducibility and replicability. Joshua Bon and I wrote a discussion that synthesised the following and sometimes rambling remarks.

Overall, this is a mind-challenging paper with definitely original style and contents for which the authors are to be congratulated!

“…p-values are interpreted as indicating amounts of evidence against the null, and their definition does not need to refer to any specific alternative H¹. Exactly the same holds for e-values: the basic interpretation ‘a large e-value provides evidence against H’ holds no matter how the e-variable is defined, as long as it satisfies (1). If they are defined relative to H¹ that is close to the actual process generating the data they will grow fast and provide a lot of evidence, but the basic interpretation holds regardless.”

About the entry section, one may ask why would a Bayesian want to test the veracity of a null hypothesis. The debate has been raging since the early days, although Jeffreys spent two chapters of his book on the topic of testing. (While appearing in Example 5 p.14 for his point estimation prior.) From an opposite viewpoint, the construction of e-values and such in the paper is highly model dependent, but all models are wrong! and more to the point both hypotheses may turn out to be wrong for misspecified cases. The notion thus seems on the opposite to be very M-close, with no idea of what is happening under misspecified models or why is rejecting H⁰ the ultimate argument.

When introducing e-values, (1) is not a definition per se, since otherwise E≡1 would be an e-value. This is unfortunate as the topic is already confusing enough. E[E] must be larger than 1 under H¹, otherwise product of e-values would always degenerate to zero (?)

The points

  1. behaviour under optional continuation [by a martingale reasoning]
  2. interpretation as ‘evidence against the null’ as gambling [unethical!]
  3. in all cases preserving frequentist Type I error guarantees
  4. e-variables turn out to be Bayes factors based on the right Haar prior [rather than sometimes with highly unusual (e.g. degenerate) priors? p.4]
  5. e-variables need more extreme data than p-values in order to reject the null

are rather worthwhile, even though 2. is vague and 3. is firmly frequentist. Any theory involving Haar priors (and even better amenability) cannot be all wrong, though, even considering that Haar priors are improper. The optional continuation in 1. is a nice argument from a Bayesian viewpoint since it has also been used to defend the Bayesian approach. Point 4. brings a formal way to define least favourable priors in the testing sense. One may then wonder at the connection with the solution of Bayarri and Garcia-Donato (Biometrika, 2007). The perspective adopted therein is somehow an inverse of the more common stance when the prior on H⁰ is the starting point [and obviously known]. So, is there any dual version of e-values where this would happen, i.e. leading to deriving the optimal prior on H¹ for a given prior on H⁰? (Which would further offer a maximin interpretation.) Theorem 1 indeed sounds like the minimax=maximin result for test settings. (In Corollary 2, why is (10) necessarily a Bayes factor, given the two models?)

While I first thought that the approach leads to finding a proper prior, the “Almost Bayesian Case” [p.17] (ABC!!) comes to justify the use of a “common” improper prior over nuisance parameters under both hypotheses, which while more justifiable than in the original objective Bayes literature, remains unsatisfactory to me. But I like the notion in 2.2 [p.10] that a prior chosen on H¹ forces one to adopt a particular corresponding prior on H⁰, as it defines a form of automated projection that we also considered in Goutis [RIP] and Robert (Biometrika, 1998). Corollary 2 is most interesting as well. However, taking the toy example of H⁰ being a normal mean standing in (-a,a) seems to lead to the optimal prior on H⁰ being a point mass at +/- a for any marginal m(y) centred at zero. Which is a disappointing outcome when compared with the point mass situation. It is another disappointment that the Bayes Factor cannot be an e-value since (6) fails to hold, but (1) is not (6) and one could argue that the BF is an e-value when integrating under the marginals!

As a marginalia, the paper made me learn about the term (and theme) tragedy of the commons, a concept developed by [the neomalthusian and eugenist] Garett Hardin.

In conclusion, we congratulate the authors on this endeavour but it remains unclear to us (as Bayesians) (i) how to construct the least favourable prior on H0 on a general basis, especially from a computational viewpoint, and, more importantly, (ii) whether it is at all of inferential interest [i.e., whether it degenerates into a point mass]. With respect to the sequential directions of the paper, we also wonder at the potential connections with sequential Monte Carlo, for instance, towards conducting sequential model choice by constructing efficiently an amalgamated evidence value when the product of Bayes factors is not a Bayes factor (see Buchholz et al., 2023).