Archive for Australia

Un Diario del Año de les Tapes

Posted in pictures, Running, Statistics, Travel, University life with tags , , , , , , , , , , , , , , , , , , , , on November 29, 2025 by xi'an

On my five-day stay in Sevilla, I got reacquainted with the small streets of the old town, and those of Cadiz for a sunny if short day outing, both that share some similarity with Venice!, as long as the bank of the Guadalquivir where I sent training every early morning. (If missing the opportunity of running the Cádiz media maratón with a last-minute bib a colleague of my wife had procured, due to a lack of favourable public transportation. I was further unsure running even relaxedly a half-marathon a week before my favourite half-marathon was such a great idea.)) I also enjoyed very much the company of the young statisticians and operation researchers at 5SYSORM, including discussions with Antía Enríquez about network scale-up methods, which I had heard off previously (but wondered at the matter of over-counting), alas missing the plenary by Rosa E. Lillo, and with  Adam Olivares about modelling stochastically ordered pairs through a mixture representation (above) I was unaware off. (Also kudos to all participants for sticking to inglés while I was the only participant not fluent in español!)

Foodwise, I (over?!) sampled half-a dozen tapas bars, both in Sevilla and Cádiz, with varying returns, but came back with several great experiences and the (obvious) rule that back-street, low-key, bars, with some pensioner patrons, were to be preferred. Not much greens though, apart from a nearby farmers’ market! (Sorry for the catalán tapes, as I could not find an Andalusian word that sounded like Peste, but with a positive vibe!!!)

Unsurprisingly, I did not have much time to read, except in trains and planes, but finished Les Chaînes de Markov by Noham Selcer, whose title is more a pretence than a driving line. As the story painfully unrolls along the uninteresting couple issues of a (former) maths teacher and a French literature teacher. With artificial dialogues and an overall whining tone that gave me toothaches! There is no redeeming character in the novel, which furthermore describes rural places in Normandie in the worst possible terms. I also tried to complete reading Juice by Tom Winton, but I gave up on this post-apocalyptic story where the climate crisis does not stop radical eco-warriors to flight around the World to assassinate descendants of the powerful people who could have acted against climate change, a poor merge of Mad Max (Oz, of course!) and The Road . Very binary. It took me 50 pages to realise the story was set in the Northwestern part of Australia. And another 50 page to give up! I also started The Witcher Season 4 a few days before leaving, with a new actor William Hemsworth replacing Henry Cavill, “as charismatic as a bollard with a wig”, a season that proves a complete disaster, in part but only in part because the original story itself deteriorates at this point. I stopped early, once I reached a dreadful anime of the vampyre’s background.

Nature tidbits [23 October 2025]

Posted in Books, Kids, pictures, Running, Travel, University life with tags , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , on November 27, 2025 by xi'an

In this October issue of nature, plenty of the “usual” topics, namely AI and Trump.2.0 wrecking balls, along with two cosmology entries that related to my trip to the early universe last week, and a pros-and-cons opposition about animal testing,

a discussion on the nature of the “little red dots” that have been recently observed and whose nature remains open, the most popular explanation (I was given during lunch) being black holes surrounded by gas (even though I cannot understand why the gas is not attracted by the black hole!) [and would have produced a more exciting cover!]

a review of the recent book Discordance: The Troubled History of the Hubble Constant by Jim Baggott, entitled Why we still don’t understand the Universe — even after a century of dispute! A review that regrets that more time is spent on the Hubble “constant” (which varies with time!) rather than more controversial issues like dark matter and dark energy (And strangely bemoans that the book is focussed on scientific developments, missing sociological ones. Duh?! (Bonus for a picture of suit-and-tie Edwin Hubble sitting at the centre of a telescope),

two entries on the well-being [or lack thereof] of PhD students, with nothing particularly surprising (eg, inclusivity and respect help!), and Brazil, Australia and Italy ranking top locations but in a comparative study that does not mention France (as often in international comparisons found in Nature) despite the place being in the top 10 countries delivering PhD degrees, not that I believe PhD students are particularly well-treated in French academia!, the (unexplained) surprise being Italy ranking so high given the close resemblance between the two countries (low stipends, shortage of postdoc and permanent positions, high teaching loads for the advisor, limited travel budgets),

a conference (purposedly) made of AI-written papers reviewed by AI referees, Agents4Science 2025, how universities are rushed into adapting to AI-fluent students, whose skills are changing, and the rise in fake authors produced by paper mills, with a limited range of acceptable solutions,

why Trump 2.0‘s blackmail on pharmaceutical companies is counter-productive and likely to slow down progress, and why his massive increase of highly qualified scientists is shooting (or nuking) USelf in the foot, given the huge proportion) of im/emigrated Nobel prize winners (for physics, chemistry, and medicine), along the (post-) Nobel prize in economics is a direct or indirect reply to this regression by awarding the Prize to economists who worked on the importance of creativity and science on growth (not very surprising at first look!)

Bayes on the Beach 2026 (University of Wollongong, NSW, 9-11 Feb.)

Posted in Kids, Mountains, pictures, R, Running, Statistics, Travel, University life, Wines with tags , , , , , , , , , , , , , , , on September 18, 2025 by xi'an

get up, clean up, don’t give up the files (and the termites)

Posted in Linux, pictures with tags , , , , , , , , , , , , on September 7, 2025 by xi'an

As I was trying early July to upgrade my current version of Ubuntu (after a year of procrastination) to 24.04 (Noble Numbat!), I found there was no enough space on the partition element where the upgrade was to take place. I thus started removing superfluous applications, until removing a clock induced a massive removal of attached files and required reinstalling the missing theme to log in…

1924 sudo apt-get autoremove
1926  sudo apt-get autoclean
1929  sudo du -d 1 -h
1932  shutdown -r now
1934  apt-get install sddm-theme-breeze
1935  sudo apt-get install sddm-theme-breeze
1936  sudo apt-get install --reinstall plasma-desktop
1941  logout
1943  sudo apt list --installed | grep -i linux-image
1946  sudo du -h /var/lib/snapd/snaps
1947  sudo journalctl --disk-usage
1957  sudo apt remove linux-image-5.4.0-97-generic
1961  sudo apt remove linux-image-5.4.0-71-generic

I then realised older versions of the Linux kernel were store on that space and eating most of that precious space (as numbats are eating termites) and removed most of these versions with no visible damage. The same issue (of the missing breeze theme preventing regular login) occurred once again at the upgrade stage, with the same patch.

Seminal ideas and controversies in Statistics [book review]

Posted in Books, Mountains, pictures, Statistics, Travel, University life with tags , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , on May 24, 2025 by xi'an

CRC Press sent CHANCE this book for review. Since the topic was of clear interest to me, with an author who significantly contributed to the field—my only recollection meeting Roderick Little was during the Australian Statistical Conference in Adelaïde, in 2012, at the start of my Oz 2012 Tour!—, I took the opportunity of the nearest weekend to browse through Seminal ideas and controversies in Statistics. I like very much the idea of selecting a dozen key papers in the history of Statistics and of discussing why. In fact, this reminded me of my classics seminar, which lasted the few years I was 100% in charge of the Master program in Dauphine (and which I hope I could restart!). Checking the list of the papers I then suggested my students, I see some overlap with 9 papers out of the 15 groups. (I also remember Steve Fienberg making suggestions for that list, while he was spending a sabbatical in Paris at CREST.) Given that community of focus and purpose, and contrary to my wont, I have really very little of substance to criticize or wish about the book. The less when reading the following

“On a personal note, I met Yates [author of a 1984 paper on tests for 2×2 contingency tables discussing the relevance of conditioning on one or both margins], a charming man, when I was a young graduate student who knew next to nothing about statistics; we discussed the joys of traversing the Cuillin Ridge in Skye.”

since completing that ridge remains high in my mountain-climbing bucket-list! (Possibly next year, since we are running an ICMS workshop on the Island.)

The first paper in the series is more than a foundational paper since (The) Fisher’s 1922 paper is about creating (almost) ex nihilo the field of (modern) mathematical statistics. I don’t know if there is any equivalence in other scientific disciplines of such an impact (and of such a man)… Roderick Little manages to convincingly engage with Fisher’s dismissive views on (not yet called) Bayesian analysis, although, to the latter’s defence, the formalisation of Bayesian inference at that time had not yet emerged. The second chapter is discussing Yates’ 1984 paper on tests for 2×2 contingency tables that he wrote 50 years after writing the original one in the first volume of JRSS. Roderick Little adds a detailed Bayesian analysis with the three standard reference priors, Jeffreys’ version proving quite close to Fisher’s exact test (conditional on both margins). The third chapter is aiming at the generic challenge of hypothesis testing, from the well-known opposition between Fisher and Neyman (both on the cover), to questioning the sanity of hard-set thresholds (with a mention of our American Statistician call to abandon (shi)p!). The later (thus) refers to the recent literature on the replicability crisis and the now famous ASA statement on p-values by Ron Wasserstein and Nicole Lazar, analysed in the chapter. But I would have like to read another full section on alternatives to hypothesis testing. While now a niche interest (imho), Fisher’s attempt at creating a posterior distribution without a prior, aka fiducial inference, is discussed in Chapter 4 with the Behrens-Fisher problem as the illustrating example. The chapter feels rather anticlimactic, with the comparison relying on the (Malay) Ghosh and Kim (2001) simulation results.

Birnbaum’s (1962) likelihood principle is the topic of Chapter 5 (and I cannot remember any of my students choosing this paper over the years, although there was at least one). Roderick Little recalls some sentences from the JASA discussion as an appetiser, a reminder of the time when these discussions could turn in scathing attacks. The chapter contains excerpts from Berger and Wolpert (1988)—which they were writing while I was spending a year at Purdue and which I have always recommended to my PhD students, albeit not for the classic seminar. It then moves to the controversies that surround this principle since its inception, in particular those accumulated by Deborah Mayo (also on the cover) as reported on the ‘Og. In the recent years, I have become less excited about the LP, in part due to the imprecision in its statement, which opens the door to conflicting interpretations. And in part due to the scarcity of models with non-trivial sufficient statistics. (I am also wondering if the sufficiency issue we highlighted in our ABC model choice criticism does relate to the mixture example at the end of the chapter.)

The next chapter is one all for compromise, through the calibrated Bayes perspective that credible statements should be close to confidence statements in the long run. Which I remember him presenting at ASC 2012. The concept is found in the very 1984 paper by Don Rubin (also on the cover) that contains the concept behind Approximate Bayesian Computation (ABC). And the chapter proceeds by listing strengths and weaknesses of frequentist and Bayesian perspectives, towards a fusion of both., e.g. though posterior predictive checks.

While the choice of a (general public) paper from Scientific American may sound surprising in Chapter 7, with Efron’s (on the cover) and Morris’ 1977 Stein’s paradox, I cannot but applaud, the more because this was the first paper I read when starting my PhD on the James-Stein estimators. Although this may sound like happening eons ago, the James and Stein (1961) paper—which is my age!—”created a considerable backlash” by toppling unbiasedness from its pedestal and exhibiting a paradox that 1+1+1≠3… Which Little reinterprets via a random effect (or Bayesian hierarchical) model. (And a chapter where I learned that Little’s father was a journalist, a characteristic he shared with Bruce Lindsay, as I found at Blonde, Glasgow, during an ICMS workshop). Relatedly, the next chapter is about the “57 varieties [of regression] paper” by Demptster, Schatzoff and Wermuth (1977). Apparently connected with Heinz 57 varieties of pickles. The paper considers Stein and ridge and variable selections versions for variable selection. The chapter also covers (Bayesian) Lasso and BART, as well as a brief all too brief mention of Spike & Slab priors—with my friend Veronika Ročková missing from the authors’ index!—,  but I was expecting from the title other, robust, forms of regression like L¹ regression and econometrics digressions. Chapter 10 can however been seen as a proxy since covering generalized estimating equations from a 1986 Biometrika paper of Liang and Zeger, with no Bayesian aspect (and an expected appearance of Communications in Statistics B).

Chapter 9 covers the almost immediately classic 1995 paper of Benjamini and Hochbeg on multiple regressions (that Series B turned into a discussion paper ten years later!). Although it spends more time on Berry’s (2012) recommendations than on FDR. The computational Chapter 11 brings together Efron’s (1979) bootstrap [with his picture on the cover] and MCMC, represented by the founding paper of Gelfand and Smith (1990, if mistakenly set in 1988 on p140). A bit of a strange mix imho as the former is more inferential than computational. And not giving the EM algorithm that much space. And not questioning MCMC methods as a good proxy to posterior distributions. Tukey’s Future of Data Analysis (as founding exploratory data analysis) and Breiman’s Two cultures (as launching statistical machine learning) meet in Chapter 12. (With a reminder that the latter invokes Occam’s razor—which may not be that appropriate for hugely overparameterised machine learning black boxes—and…the Rashomon principle! Meaning that distinct models may all fit the same data. Let me nitpickingly add the reference to Ryûnosuke Akutagawa as the author of Rashômon and other stories that Kurosawa adapted in his splendid movie). The chapter contains critical remarks from David Cox, Brad Efron, David Bickel, and Andrew Gelman, with a further section on Little’s view on modelling.

The last three chapters are on design and sampling, in connection with Little’s (and Rubin’s) works in the area. With a 1934 paper of Neyman (whose picture on the cover could have been chosen differently, albeit no fault of Neyman [or of Little!] that his toothbrush style of moustache dramatically got out of fashion!). With a return to calibrated Bayes and a reminiscence of Little’s time at the World Fertility Survey but (apparently) no mention of the probabilistic aspects of modern censuses (that saw my friends Steve Fienberg on the one side and Larry Brown and Marty Wells on the other side argue for and against it!), again relating to the reliance on statistical models. Chapter 14 relates randomized clinical trials to causality, which makes a (worthy) appearance there. Roderick Little also makes a clear case there against the retracted study linking vaccines and autism, a call that will unlikely not reach the current Trump administration and its Secretary of Health.

The book concludes with a list of twenty style and grammar suggestions for improved writing.

As should be crystal-clear from the above, I quite enjoyed the book and would definitely use its reading list in a graduate course whenever the opportunity arises. Once again, some choices are more personal to the author than others, and I would have place more emphasis on the fantastic Dawid, Stone and Zidek (1973)—with Jim Zidek also missing from the author index—, but all make sense in a walk through statistical classics. Let me however regret the absence therein of major actors like, e.g., D. Blackwell, C.R. Rao,  or G. Wahba (except in a stylistic example p199), two of whom were awarded the International Prize in Statistics.

[Disclaimer about potential self-plagiarism: this post or an edited version will eventually appear in my Books Review section in CHANCE.]