venerdì 24 giugno 2011

Installing Multiple Version of R in parallel on the same machine - Mac OS X

In a few days I'm going to attend a Bioconductor Course; I was requested to install on my MacBook (Mac OS X 10.5.8) a developer version of R (plus ad hoc Bioconductor packages). In order to keep my old R installation ((2.13) along side the new one (2.14) I decided to use the RSwitch app (you can download from here) and the instructions you can read here.
In practical term, you type the following commands in Terminal:

sudo pkgutil --forget org.r-project.R.Leopard.fw.pkg
sudo pkgutil --forget org.r-project.R.Leopard.GUI.pkg
sudo pkgutil --forget org.r-project.R.Leopard.GUI64.pkg


You install the alternative version of R (for example, following the procedure depicted here) and then you can switch between the different version using the RSwitch GUI (see the below screenshot). So easy!



giovedì 14 aprile 2011

R 2.13.0 is released!

The new R 2.13.0 is out! Get the source code from here.
Take a look at these posts for some miscellaneous advices to make the upgrade easier.
Also this thread on stackoverflow and this post contributed by Tal Galili can be of some value to make the procedure less painful.
Feel free to contribute with suggestions about how to upgrade your R installation.

mercoledì 2 febbraio 2011

venerdì 31 dicembre 2010

lunedì 8 novembre 2010

A R wrapper for Google Prediction API

Since I got the chance to access to both Google Storage for Developers and Google Prediction API (more details here and here), I decided to create a simple wrapper (just 4 basic functions until now) to be capable to play with the Google Prediction API from R.
Here you can find the github repository for the project and below few lines of code reproducing an example you can find on the Google Prediction API website.

Download the source code from here.
Either source the functions contained in the R directory or install the package typing (from the command line in a Unix-like environment):
R CMD INSTALL predictionapirwrapper_1.0.tar.gz
# start R and type (code highlighting thanks to Revolution Analytics Pretty R syntax highlighter):
library(predictionapirwrapper)
## The first stage of using the API is to acquire an authorization token. This can be done via this command:
token <- GetAuthToken(email="user@gmail.com", passwd="mypassword")
## This command begins training on data that has been previously uploaded to Google Storage.
GoogleTrain(auth_token=token$Auth, mybucket="data_languages", mydata="language_id.txt")
## Once training has started, this command checks the status of the training job and gets meta-information on the model (if available).
GoogleTrainCheck(auth_token=token$Auth, mybucket="data_languages", mydata="language_id.txt")
## When training has finished, this command issues a request for a new prediction from the model. 
GooglePredict(auth_token=token$Auth, mybucket="data_languages", mydata="language_id.txt", myinput="La idioma mas fina")

All comments, corrections, alternative code are more than welcome!

Update: a more complete and functional alternative can be found here.

venerdì 15 ottobre 2010

R 2.12.0 is released!

The new R 2.12.0 is out! Get the source code from here.
Take a look at these posts for some miscellaneous advices to make the upgrade easier.
Also this thread on stackoverflow can be of some value.
Feel free to contribute with suggestions about how to upgrade your R installation.

mercoledì 21 luglio 2010

R Cheat Sheets and more

Here you can find a collection of cheat sheets useful to R developers.
Visit the devcheatsheet homepage to inspect cheat sheets and quick reference card for other programming languages and applications.